Antigen

Antigen Class

TFs and others

Antigen

Hsf1

Cell type

Cell type Class

Neural

Cell type

Corpus Striatum

MeSH Description

Striped GRAY MATTER and WHITE MATTER consisting of the NEOSTRIATUM and paleostriatum (GLOBUS PALLIDUS). It is located in front of and lateral to the THALAMUS in each cerebral hemisphere. The gray substance is made up of the CAUDATE NUCLEUS and the lentiform nucleus (the latter consisting of the GLOBUS PALLIDUS and PUTAMEN). The WHITE MATTER is the INTERNAL CAPSULE.

Sample

source_name

STHdhQ111/Q111 striatal cells

cell type

striatal cells derived from HdhQ111/Q111 knock-in embryonic mice

genotype

HdhQ111/Q111

treatment

no treatment

chip antibody

HSF-1

chip antibody manufacturer

Santa Cruz

Sequenced DNA Library

library_name

GSM931694: HSF1 STHdhQ111/Q111 no treatment ChIP-seq

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

8801133

Reads aligned (%)

89.5

Duplicates removed (%)

15.1

Number of peaks

549 (qval < 1E-05)

mm9

Number of total reads

8801133

Reads aligned (%)

89.3

Duplicates removed (%)

15.5

Number of peaks

578 (qval < 1E-05)