Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hsf1

Cell type

Cell type Class
Neural
Cell type
Corpus Striatum
MeSH Description
Striped GRAY MATTER and WHITE MATTER consisting of the NEOSTRIATUM and paleostriatum (GLOBUS PALLIDUS). It is located in front of and lateral to the THALAMUS in each cerebral hemisphere. The gray substance is made up of the CAUDATE NUCLEUS and the lentiform nucleus (the latter consisting of the GLOBUS PALLIDUS and PUTAMEN). The WHITE MATTER is the INTERNAL CAPSULE.

Attributes by original data submitter

Sample

source_name
STHdhQ111/Q111 striatal cells
cell type
striatal cells derived from HdhQ111/Q111 knock-in embryonic mice
genotype
HdhQ111/Q111
treatment
no treatment
chip antibody
HSF-1
chip antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_name
GSM931694: HSF1 STHdhQ111/Q111 no treatment ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
8801133
Reads aligned (%)
89.5
Duplicates removed (%)
15.1
Number of peaks
549 (qval < 1E-05)

mm9

Number of total reads
8801133
Reads aligned (%)
89.3
Duplicates removed (%)
15.5
Number of peaks
578 (qval < 1E-05)

Base call quality data from DBCLS SRA